Know the cell population of your data¶
ICEPOP (Immune CEll POPulation) is the method for estimating immune cell population in the expressed genes. It enable analysis of differentially expressed genes (DEGs) or raw expression data. These APIs and scripts will let you have a fine grained control on the data analysis lacking in the web version. On top of the core immune cell population deconvolution, it allows you to download the raw data from NCBI GEO gene expression database, normalize, and plot the data using command line interface.
Installation¶
Scripts¶
We provide a command line scripts for peforming key analysis.
API documentation¶
If you are looking for information for specific function, class or method, this part of the documentation is for you.
- icepop package
- Submodules
- icepop.cell_proportion module
- icepop.cellpop_score module
- icepop.clock module
- icepop.cluster_cellpop_score module
- icepop.clustering module
- icepop.draw_cellpop module
- icepop.enumerate_output module
- icepop.geo module
- icepop.input_reader module
- icepop.serialize_cell_proportion module
- icepop.species_cell_proportion module
- icepop.specificity module
- icepop.targetmine_query_urllib module
- Module contents
