Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
J
|
L
|
M
|
N
|
P
|
R
|
S
A
accumulate() (in module icepop.geo)
assign_specificity_score() (in module icepop.specificity)
B
bar_plot() (in module icepop.draw_cellpop)
bar_plot_facet() (in module icepop.draw_cellpop)
bind_sparseness_score() (in module icepop.specificity)
C
cellpop_cluster_heatmap() (in module icepop.draw_cellpop)
choose_autopct() (in module icepop.draw_cellpop)
choose_organ() (in module icepop.species_cell_proportion)
clockit() (in module icepop.clock)
cluster() (in module icepop.clustering)
cluster_cellpop_score() (in module icepop.cluster_cellpop_score)
ComputeAverage() (icepop.cell_proportion.ImmGen method)
(icepop.cell_proportion.Iris method)
ComputeAverageByOrgans() (icepop.cell_proportion.ImmGen method)
ComputePercentageWeight() (icepop.cell_proportion.ImmGen method)
(icepop.cell_proportion.Iris method)
ComputePercentageWeightBracket() (icepop.cell_proportion.ImmGen method)
condn_plot() (in module icepop.draw_cellpop)
condn_thres_mat() (in module icepop.specificity)
D
deg_cellpopscore_df() (in module icepop.cellpop_score)
deg_cellpopscore_generank() (in module icepop.cellpop_score)
E
enumerate_geneclust_go_output() (in module icepop.enumerate_output)
enumerate_geneclust_output() (in module icepop.enumerate_output)
enumerate_output() (in module icepop.enumerate_output)
F
find_best_marker_genes() (in module icepop.specificity)
find_marker_genes() (in module icepop.specificity)
find_threshold() (in module icepop.cellpop_score)
find_topk_marker_genes() (in module icepop.specificity)
G
get_genebygene_fc_score_matrix_product() (in module icepop.cellpop_score)
get_gpl() (in module icepop.geo)
get_pheno_prop_immgen() (in module icepop.species_cell_proportion)
get_pheno_prop_iris() (in module icepop.species_cell_proportion)
get_population_values() (in module icepop.cellpop_score)
get_prop() (in module icepop.species_cell_proportion)
get_tgm_data() (in module icepop.targetmine_query_urllib)
GetGeneCelltypeDoList() (icepop.cell_proportion.ImmGen method)
I
icepop (module)
icepop.cell_proportion (module)
icepop.cellpop_score (module)
icepop.clock (module)
icepop.cluster_cellpop_score (module)
icepop.clustering (module)
icepop.draw_cellpop (module)
icepop.enumerate_output (module)
icepop.geo (module)
icepop.input_reader (module)
icepop.serialize_cell_proportion (module)
icepop.species_cell_proportion (module)
icepop.specificity (module)
icepop.targetmine_query_urllib (module)
ImmGen (class in icepop.cell_proportion)
inlist() (in module icepop.targetmine_query_urllib)
Iris (class in icepop.cell_proportion)
iterate() (in module icepop.geo)
J
jsd_vectorized() (in module icepop.specificity)
L
load() (in module icepop.geo)
load_hdf_cvfilter() (in module icepop.input_reader)
M
main() (in module icepop.cell_proportion)
(in module icepop.cellpop_score)
(in module icepop.cluster_cellpop_score)
(in module icepop.clustering)
(in module icepop.enumerate_output)
(in module icepop.input_reader)
(in module icepop.serialize_cell_proportion)
(in module icepop.species_cell_proportion)
(in module icepop.targetmine_query_urllib)
make_immgen_expr() (in module icepop.serialize_cell_proportion)
make_immgen_expr_cpop_phendict() (in module icepop.serialize_cell_proportion)
make_immgen_expr_phenotype() (in module icepop.serialize_cell_proportion)
make_immgen_specificity() (in module icepop.serialize_cell_proportion)
make_immgen_weight() (in module icepop.serialize_cell_proportion)
make_iris() (in module icepop.serialize_cell_proportion)
make_iris_expr() (in module icepop.serialize_cell_proportion)
make_iris_expr_cpop_phendict() (in module icepop.serialize_cell_proportion)
make_iris_expr_phenotype() (in module icepop.serialize_cell_proportion)
merge_scorematrix_samplefc() (in module icepop.cellpop_score)
N
normalize() (in module icepop.specificity)
normalize_tables() (in module icepop.species_cell_proportion)
P
pearson_distance() (in module icepop.clustering)
pieplot_deconv() (in module icepop.draw_cellpop)
R
read_file() (in module icepop.input_reader)
read_hdf() (in module icepop.input_reader)
read_hdf_expr() (in module icepop.input_reader)
read_hdf_from_file() (in module icepop.input_reader)
read_immgen_hdf_pheno() (in module icepop.input_reader)
read_iris_hdf_pheno() (in module icepop.input_reader)
read_specificity_pickle() (in module icepop.input_reader)
S
sample_response_score() (in module icepop.cellpop_score)
sparseness() (in module icepop.specificity)
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